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3D-AUNet-DS: A Residual Attention U-Net with Deep Supervision and Composite Loss for Multi-Class Brain Tumour Segmentation on BraTS 2020


Authors : Ameer Hamza; Yihong Zhang; Md Saifur Rahman; Shijun Sun; Yaoyao Ran; Ali Sajid; Muhammad Abubakr

Volume/Issue : Volume 11 - 2026, Issue 5 - May


Google Scholar : https://tinyurl.com/4fh93kv7

Scribd : https://tinyurl.com/466sj3kx

DOI : https://doi.org/10.38124/ijisrt/26May529

Note : A published paper may take 4-5 working days from the publication date to appear in PlumX Metrics, Semantic Scholar, and ResearchGate.


Abstract : Accurate segmentation of brain tumour sub-regions from multi-modal MRI remains clinically challenging, as conventional three-dimensional U-Net architectures are hampered by vanishing gradients, indiscriminate skip-connection propagation, and insufficient multi-scale supervision, collectively limiting robust delineation of heterogeneous tumour components on the BraTS 2020 benchmark. An Enhanced Three-Dimensional Attention U-Net with Deep Supervision is proposed, trained on 128³ isotropic volumes from three MRI modalities (FLAIR, T1ce, T2) using stochastic multitransform augmentation and a composite class-weighted Dice–focal–boundary loss to jointly address class imbalance and imprecise enhancing tumour delineation. The architecture incorporates a fully residual encoder–decoder backbone with graduated spatial dropout (0.10–0.30), soft spatial attention gates at every skip connection to suppress background activation, and a resolution-aware deep supervision scheme weights with morphological post-processing to enforce anatomical plausibility. The proposed method achieves Dice scores of 0.817, 0.811, and 0.846 for enhancing tumour, tumour core, and whole tumour respectively, with HD95 values of 2.95, 3.24, and 3.97 mm, demonstrating superior boundary precision over nnU-Net, Swin UNETR, TransUNet, H2NF-Net, and ACU-Net, confirming the clinical viability of the integrated framework for precise multi-class brain tumour segmentation.

Keywords : Brain Tumour Segmentation, Multimodal MRI, Attention U-Net, Residual Learning, Deep Supervision, Brats 2020, Class-Weighted Loss, Tumour Delineation.

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Accurate segmentation of brain tumour sub-regions from multi-modal MRI remains clinically challenging, as conventional three-dimensional U-Net architectures are hampered by vanishing gradients, indiscriminate skip-connection propagation, and insufficient multi-scale supervision, collectively limiting robust delineation of heterogeneous tumour components on the BraTS 2020 benchmark. An Enhanced Three-Dimensional Attention U-Net with Deep Supervision is proposed, trained on 128³ isotropic volumes from three MRI modalities (FLAIR, T1ce, T2) using stochastic multitransform augmentation and a composite class-weighted Dice–focal–boundary loss to jointly address class imbalance and imprecise enhancing tumour delineation. The architecture incorporates a fully residual encoder–decoder backbone with graduated spatial dropout (0.10–0.30), soft spatial attention gates at every skip connection to suppress background activation, and a resolution-aware deep supervision scheme weights with morphological post-processing to enforce anatomical plausibility. The proposed method achieves Dice scores of 0.817, 0.811, and 0.846 for enhancing tumour, tumour core, and whole tumour respectively, with HD95 values of 2.95, 3.24, and 3.97 mm, demonstrating superior boundary precision over nnU-Net, Swin UNETR, TransUNet, H2NF-Net, and ACU-Net, confirming the clinical viability of the integrated framework for precise multi-class brain tumour segmentation.

Keywords : Brain Tumour Segmentation, Multimodal MRI, Attention U-Net, Residual Learning, Deep Supervision, Brats 2020, Class-Weighted Loss, Tumour Delineation.

Paper Submission Last Date
31 - May - 2026

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